PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000711.1_g070.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 723aa    MW: 79392.8 Da    PI: 6.5081
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000711.1_g070.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23121222199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +g
  Pav_sc0000711.1_g070.1.mk 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAG 202
                                89****************************996555555..89***************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   + +++ l+v+++r+
  Pav_sc0000711.1_g070.1.mk 203 DSIVFL--RAENGDLCVGIRRA 222
                                ******..4488999****997 PP
2Auxin_resp113.61.8e-37310393183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ as++++FevvY+Prast+eF+vk++ v+ al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+
  Pav_sc0000711.1_g070.1.mk 310 AATLASNGQPFEVVYYPRASTPEFCVKASLVKVALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 393
                                6899******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MITFMDSKEK LKEGEKCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACGPVDFRNC  60
PRVPPYIFCR VSAIKFMADP ETDEVYAKIR LVPLSASEAG YEDDGIGGLN GSETPDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPTG  240
GNCTMPYGGY SAFLREDENK LMRNGNGSNS NGSLMGKGKV GPESVFEAAT LASNGQPFEG  300
KVGPESVFEA ATLASNGQPF EVVYYPRAST PEFCVKASLV KVALQIRWCP GMRFKMAFET  360
EDSSRISWFM GTISSVQVAE PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP  420
AIHLTPFSPP RKKMRLPQHP DFPFEGQLPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH  480
GHYGLSLSDM HLNKLQTGLF PAGFTPLDHA ATATKFSNNT MTQKPTMREN VSCLLTMAHS  540
TQTSKKPDDV KPPQLVLFGQ PILTEQQISL SCSGDTVSPV LTGNSSSDGN AEKTANLSDN  600
SGSALHQQSL QERSSCEGFQ WYKDTRQETE PSLETDHCKV FMESEDVGRT LDLSVFGSYD  660
ELYRKLADMF GIETSETLNH VLYRDATGAV KHIGDEPFSC SDFMKTARRL TILMDSGSNN  720
VGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein