PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000732.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 565aa MW: 64198.6 Da PI: 6.8218

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000732.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.9	7.5e-30	118	203	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+ Pav_sc0000732.1_g010.1.mk 118 RWPRQETLTLLEIRSGLDSKFKETNQKGPLWDEVSRIMgEEHGYQRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFR 199 8***********************************99**************************98..55667* PP trihelix 84 qlea 87 qlea Pav_sc0000732.1_g010.1.mk 200 QLEA 203 85 PP
2	trihelix	52.1	1.8e-16	415	494	1	79
trihelix 1 rWtkqevlaLie.arremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rWt++ev Li+ +r+++e ++++ g+ k++lWee+++km g++rs +Ckekwen+ + ++e +kk++++++ Pav_sc0000732.1_g010.1.mk 415 RWTEHEVASLIRlIRTSLELTIQDgGCFKEGLWEEIAAKMGCLGYRRSVGECKEKWENMGVFPRMTAECNKKHKQDAK-AN 494 8********9457788889998579*****************************98888888888888854443.33 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MDEYGVPDLR QLMASRTQFC TTSQFQEPFS AHGNLTAQPY YQPMLVPAGG LVDHLHPPHY 60 STIINGCAAA HPPNNNAAAT TSSAAALYGI DLEHGHGWNN NMNVGMNAAD GGNNMNCRWP 120 RQETLTLLEI RSGLDSKFKE TNQKGPLWDE VSRIMGEEHG YQRSGKKCKE KFENLYKYYK 180 KTKEGKAGRQ DGKHYRFFRQ LEAIYGDQTS NQSSTYGRLN PLLYHHTTPN DTVNPKNQEV 240 VQDQKHISCE SLSFSNNSTE FDQTSSSENN DDDLSISAID YFMMNQSMGS LKNEKQSCAR 300 PVNKKSWKAK VEDFVNSQIG KVINTQEAWM EKMLKSIEHR EEERIAQEEE WKKQQAAKFD 360 REVHEFWAKE RAWVESRDAA IMEALGTFSR PGISNHDKDK DDISKLQIPN DTINRWTEHE 420 VASLIRLIRT SLELTIQDGG CFKEGLWEEI AAKMGCLGYR RSVGECKEKW ENMGVFPRMT 480 AECNKKHKQD AKANMYHGQL SCYEGQQEVS KRRPDGMGLQ LMDGGLSTSS SNMDVSSSSF 540 HVQFNGGENL WDRYGTVKLS KGKNQ

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MDEYGVPDLR QLMASRTQFC TTSQFQEPFS AHGNLTAQPY YQPMLVPAGG LVDHLHPPHY  60
STIINGCAAA HPPNNNAAAT TSSAAALYGI DLEHGHGWNN NMNVGMNAAD GGNNMNCRWP  120
RQETLTLLEI RSGLDSKFKE TNQKGPLWDE VSRIMGEEHG YQRSGKKCKE KFENLYKYYK  180
KTKEGKAGRQ DGKHYRFFRQ LEAIYGDQTS NQSSTYGRLN PLLYHHTTPN DTVNPKNQEV  240
VQDQKHISCE SLSFSNNSTE FDQTSSSENN DDDLSISAID YFMMNQSMGS LKNEKQSCAR  300
PVNKKSWKAK VEDFVNSQIG KVINTQEAWM EKMLKSIEHR EEERIAQEEE WKKQQAAKFD  360
REVHEFWAKE RAWVESRDAA IMEALGTFSR PGISNHDKDK DDISKLQIPN DTINRWTEHE  420
VASLIRLIRT SLELTIQDGG CFKEGLWEEI AAKMGCLGYR RSVGECKEKW ENMGVFPRMT  480
AECNKKHKQD AKANMYHGQL SCYEGQQEVS KRRPDGMGLQ LMDGGLSTSS SNMDVSSSSF  540
HVQFNGGENL WDRYGTVKLS KGKNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	6e-86	Trihelix family protein