PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000732.1_g150.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 259aa MW: 29846.1 Da PI: 9.4924

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000732.1_g150.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.5e-20	31	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn YA ++ F +r s++++ + +ge+t++++vC k+g++ +++ + ++rr+r trtgCkakl + k + ++k+ v +++ Pav_sc0000732.1_g150.1.br 31 NFYNMYAAKARFGIRCSTTRTCTFTGEVTRKKYVCCKQGYALTSTVS--RNRRQRGCTRTGCKAKLAILKVNeKNKYTVVGFNE 112 6***************************************99888..9*************988877******* PP FAR1 84 eHnHela 90 HnH+++ Pav_sc0000732.1_g150.1.br 113 VHNHDMT 119 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MECEGQVTPE VSSELKPKLG LEFDCCEDVF NFYNMYAAKA RFGIRCSTTR TCTFTGEVTR 60 KKYVCCKQGY ALTSTVSRNR RQRGCTRTGC KAKLAILKVN EKNKYTVVGF NEVHNHDMTT 120 VDKVHILRSH RNLTESTKAY SAHMSKVNIP VHKQVSLLEV QVGGLENVGF VRRDVYNYAR 180 DVRGEVIGHD AELLKEHFLA EQGKNESFYF NMEVDSEGRI GNVFWADARS RRAYGFFGVW 240 WYLIRRSTRT AMKWSLRLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-35	FAR1 family protein