PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000740.1_g320.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 186aa    MW: 21314.5 Da    PI: 10.3756
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000740.1_g320.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-28959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien + rqvtfskRrng+lKKA+ELS+LCdaeva+ii+s++gk+y +ss
  Pav_sc0000740.1_g320.1.mk  9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALIILSPSGKIYQFSS 59
                               79***********************************************96 PP
2K-box47.86.3e-17941631887
                      K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                ++e + L++ i+nL+  +++l Ge+L+ L ++eL+qLe+qL++++++iRs+  +++ e+i+ l+ k k +
  Pav_sc0000740.1_g320.1.mk  94 NNENEELRRSIDNLEMRLKNLAGEELDMLGMQELKQLERQLKTGVERIRSQMGRVISENISLLKGKVKLH 163
                                68999**********************************************************9998754 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALIILSP SGKIYQFSSH  60
DINRTIAMYR NQVGLPESNN SSFRQARTME FGRNNENEEL RRSIDNLEMR LKNLAGEELD  120
MLGMQELKQL ERQLKTGVER IRSQMGRVIS ENISLLKGKV KLHELHYADP SSSRISGPNA  180
YMQFIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.15e-44MIKC_MADS family protein