PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000740.1_g480.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 237aa MW: 26037.2 Da PI: 5.2473

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000740.1_g480.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.2	3.7e-56	49	153	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaa Pav_sc0000740.1_g480.1.mk 49 QLQMFWTYQrhdIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAA 132 89***999999******************************************************************* PP NF-YC 82 avtrtdifdflvdivprdelk 102 a+trtdifdflvdivprde+k Pav_sc0000740.1_g480.1.mk 133 AITRTDIFDFLVDIVPRDEIK 153 ****************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MDTNPNTTTT TTTPNPTQQQ QQAQSSYPPT QSSVPAPPFH HLLQQQQQQL QMFWTYQRHD 60 IEQVNDFKNH QLPLARIKKI MKADEDVRMI SAEAPVLFAK ACELFILELT IRSWLHAEEN 120 KRRTLQKNDI AAAITRTDIF DFLVDIVPRD EIKDEAVGLG GMVGATASGV PYYYPPMGQP 180 AGGPGGMMIG RPAVDPAAVY GVQPPSQAWQ SVWQTAADDG SYGSGGSSGQ GNLDGQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-86	NF-YC family protein