PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000749.1_g090.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 234aa    MW: 25467 Da    PI: 6.4715
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000749.1_g090.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.67.5e-42781771100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq
  Pav_sc0000749.1_g090.1.mk  78 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQ 161
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                +++++l+a+la++++e
  Pav_sc0000749.1_g090.1.mk 162 KNVSELQAQLAKTQAE 177
                                ************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MEFNTSTPSA SSPPLSISQL SSPTASFPSP NNSLQLSNLS SPNYAVKNNN SIINTNSNNP  60
TSPSPPPPPP PPPVVLSPCA ACKILRRRCA EKCVLAPYFP PTEPLKFTIA HRVFGASNII  120
KLLQELPESH RADAVSSMVY EANARIRDPV YGCAGAICQL QKNVSELQAQ LAKTQAELLN  180
MQCQQGNLIA LICMDMAQSK DPILQQQQQQ QSYLDTSCFL DETNLGTAWE PLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-72LBD family protein