PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000780.1_g050.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 184aa MW: 20637.1 Da PI: 10.2649

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000780.1_g050.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Pav_sc0000780.1_g050.1.mk 43 FECKTCNRKFPSFQALGGHRASH 65 89**********99999998887 PP
2	zf-C2H2	12.4	0.00048	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Pav_sc0000780.1_g050.1.mk 96 HQCPICGLEFGMGQALGGHMRRH 118 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MKRMREDEVG LGMKGLDMEK FLMLLSCGME TKFRNCSSPN DVFECKTCNR KFPSFQALGG 60 HRASHKRPRT SMDHDQQSET RKGSNLMATK NKPKAHQCPI CGLEFGMGQA LGGHMRRHRA 120 SNMNLGFSSK VPDEVVVASK IPVLKRSSSK RIMCLEMDLN LTPLENDLKL LFGKMAPKVD 180 AFVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	2e-42	C2H2 family protein