PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000789.1_g100.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 155aa    MW: 16188.8 Da    PI: 4.8733
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000789.1_g100.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB83.91.9e-263179149
                      NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49
                               vreqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisfvts+
  Pav_sc0000789.1_g100.1.mk 31 VREQDRYLPIANISRIMKKALPQNGKIAKDAKDTVQECVSEFISFVTSD 79
                               69*********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MAEAPTSPAG GSHESGGEQS PQGGGGGGSG VREQDRYLPI ANISRIMKKA LPQNGKIAKD  60
AKDTVQECVS EFISFVTSDL FVHISSGWLE ITFLPNFEQG DAKGSARGGD GSSKGNAVGA  120
MPGPSSQQFV HQGSLNYVNP QEEYYVPLNN MGNGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.71e-31NF-YB family protein