PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000789.1_g180.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 494aa MW: 53645.4 Da PI: 7.611

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000789.1_g180.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.5e-17	175	224	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pav_sc0000789.1_g180.1.mk 175 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 224 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MLDLNVNITL TTDASFDYEK AKDMEVEELP QGSRTQMEDS GTSNSSVVNA EEAPTPSNAG 60 EEDSTNNTTS SFIFDILKKD KDGLCNTTYY GGAKDQNPSL QFVTRSLFPV TGDGGGGKEA 120 DCGLGLSSVS STARPQWLNL SFAESGGQAQ GELRIMQQKK PQPRKSRRGP RSRSSQYRGV 180 TFYRRTGRWE SHIWDCGKQV YLGGFDTAHS AARAYDRAAI KFRGVDADIN FTLGDYEEDM 240 KQLGHLNKEE FVHVLRRQST GASRGNSKYR GVALPKCGGA GGRWEARMAQ FPEKKVFEKE 300 GIKCNTGREA AAVTNFVDPS IYEGEVVLDA SIEGSGHNLD LSLGISQPSS GQKGTGNLGD 360 FQFRYKERPM VNGSAASAAV GQTPHVLTMV AKHPALYSGM YPGFLQKHEE MDSDHNRAQA 420 VSSPRYTNWA WQVHGNSNSV RPVQVFSIAA SSGFPSSMAS TAPPSANYFP PNLQGSASAS 480 YNVGRLPFPT PSTM

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MLDLNVNITL TTDASFDYEK AKDMEVEELP QGSRTQMEDS GTSNSSVVNA EEAPTPSNAG  60
EEDSTNNTTS SFIFDILKKD KDGLCNTTYY GGAKDQNPSL QFVTRSLFPV TGDGGGGKEA  120
DCGLGLSSVS STARPQWLNL SFAESGGQAQ GELRIMQQKK PQPRKSRRGP RSRSSQYRGV  180
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHS AARAYDRAAI KFRGVDADIN FTLGDYEEDM  240
KQLGHLNKEE FVHVLRRQST GASRGNSKYR GVALPKCGGA GGRWEARMAQ FPEKKVFEKE  300
GIKCNTGREA AAVTNFVDPS IYEGEVVLDA SIEGSGHNLD LSLGISQPSS GQKGTGNLGD  360
FQFRYKERPM VNGSAASAAV GQTPHVLTMV AKHPALYSGM YPGFLQKHEE MDSDHNRAQA  420
VSSPRYTNWA WQVHGNSNSV RPVQVFSIAA SSGFPSSMAS TAPPSANYFP PNLQGSASAS  480
YNVGRLPFPT PSTM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	3e-77	AP2 family protein