PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000800.1_g1590.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 306aa MW: 34788.7 Da PI: 4.6018

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000800.1_g1590.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.3	3.9e-08	9	79	8	79
trihelix 8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 l+L++ +e + ++ + ++W+ +s+++++ g+ r+ q + kw+ l +yk i+++e+ + s + Pav_sc0000800.1_g1590.1.mk 9 LLLVNEIAAVEADCLKAFSSFQKWKIISQNCSALGVPRTLDQYRRKWDALFLDYKSITQWESAS-RGGASYW 79 5566666666666666667789***************************************985.4444455 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
PDWNSTDELL LVNEIAAVEA DCLKAFSSFQ KWKIISQNCS ALGVPRTLDQ YRRKWDALFL 60 DYKSITQWES ASRGGASYWV LEIGRRKQKG LPENFDNELF RAIDNLVRVR GNQSDTDPDS 120 DPEAEIDAEA DVPDVVAEPE SKRRRRRSTH QKSCPIENSS RRCKVEKPEE THVEEKPEET 180 RAEEKPQETH AEEKPVGSCL EVIPQKSLAE EMSQKSCAKK HKNSQIEEKA ISIEEQEQIA 240 VMQLHENVEL IQAIVNENAD HEAADVKSTG DPQTDLVRRQ GDQVIACLGD IVKTLDQLRQ 300 LVQECE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	KRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	9e-56	Trihelix family protein