PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000820.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22114.5 Da    PI: 9.2913
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000820.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.7e-211962245
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               +i  +sn qvtf+kRr g++KKA+EL++LC++e+a+++fs+ +k
  Pav_sc0000820.1_g020.1.mk 19 KIAKSSNLQVTFCKRRSGLFKKASELCTLCGVEIAIVVFSPANK 62
                               58889************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MVMMKKKPSQ GRQKIPIAKI AKSSNLQVTF CKRRSGLFKK ASELCTLCGV EIAIVVFSPA  60
NKPFSFGHPH VESVLDRFLG TPKSSIDSDF TSQQAQDYMS GSSAHELNMV FTQTQNHLEA  120
EKKRGQELDE MSKAGQGSSR RCWWENPIDE MGLHELEMMK AAMKELKKNV IKQVNKISMI  180
QSCAAINSQY HSLDEW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-50M-type_MADS family protein