PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000823.1_g170.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 99aa    MW: 11233.1 Da    PI: 9.4199
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000823.1_g170.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260766.6e-241466154
                     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer 54
                               +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++ p   r
  Pav_sc0000823.1_g170.1.mk 14 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQK-PCALR 66
                               7*********************************************98.54445 PP
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    
MKENGSRKQG APSPCAACKL LRRRCAQDCV FAPYFPADEP QKFANVHKVF GASNVNKMLQ  60
KPCALRYEIV NLIHTFRLDQ QTTQVLTIWV QDEPKLLNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.18e-36LBD family protein