PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000830.1_g260.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 190aa    MW: 21642.2 Da    PI: 6.8584
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000830.1_g260.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.11.3e-2277161187
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                kfYn+YA+ vGFs+r+sk +k+ + g+  +r fvCs egkre++k +  + +++raetr gC a++k++ + ++k++vt+++ e
  Pav_sc0000830.1_g260.1.br  77 KFYNAYAYGVGFSIRRSKFHKE-KCGKLRDRLFVCSAEGKREKNKCD-GSVKSHRAETRFGCLARMKISCRLNDKYCVTEFVPE 158
                                6*****************9998.6677******************99.9999******************************** PP

                       FAR1  85 HnH 87 
                                H+H
  Pav_sc0000830.1_g260.1.br 159 HTH 161
                                *** PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MNGENNYRDD DGTQASPKLI FETGVDFNAF ADSESNEEKL SETTQGNENI ELIHSNMQKK  60
LIPITGMEFE TEEEAFKFYN AYAYGVGFSI RRSKFHKEKC GKLRDRLFVC SAEGKREKNK  120
CDGSVKSHRA ETRFGCLARM KISCRLNDKY CVTEFVPEHT HVTSGPCKTH FFRSHRNMSL  180
AQIVEADGGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-19FAR1 family protein