PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000832.1_g640.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 430aa    MW: 47079.4 Da    PI: 7.5747
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000832.1_g640.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89e-09140160526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 C +++r G C++Gd+C FaHg
  Pav_sc0000832.1_g640.1.mk 140 VCADYRR-GSCSRGDSCEFAHG 160
                                799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    
MTSVCAEQQH KFHPSHQLLS SKKSLHNTTI DIPPRKLLTR HTQTHDFPSS SPDMYSPSFS  60
TADEALLRKF LPYNAAADDS DEDDALSSDP YSSDHFRMFE FKVRRCTRSR SHDWTDCPFA  120
HPGEKARRRD PRRHHYSGTV CADYRRGSCS RGDSCEFAHG VFECWLHPAR YRTEACKDGK  180
QCKRKVCFFA HTPRQLRVLP VQSSADHTAA ALSPTPKKKY GHLSNSLGSP GSNKHCCLFC  240
HSAVTTSSPT STLLGMSHLS PPLSPAGSHC SSVNGFHNSP VMSRCSGLGL GLDQMHASTG  300
GMMIYKDVLA ELMSSLEAVK LSEAAAASPI NPNAPRWVDV SFSSTDDLDQ QQQFILSPST  360
PSPSRPFGGR GINFSDGDEN GSSRKSSLLG FDDNYYKLNN INDEIINGGG GSGSGSSSDP  420
DIGWVNELLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-82C3H family protein