PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000843.1_g200.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 385aa    MW: 42653.1 Da    PI: 4.5228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000843.1_g200.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19115164255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Pav_sc0000843.1_g200.1.mk 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 164
                                69*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MCGGAIISDF IAPTRSRLTA DYLWPDLKKS SSGKRFSKPL RPEIVDLDDD FEADFQEFKD  60
ESDVDEDDDM VEAKPSAFSA GKPSSARIIE GSTTVKSVEF NGQAEKSAKR KRKNQYRGIR  120
QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDAEAR RIRGKKAKVN FPEETPRSSA  180
KRSVKANPQK MLPKTNMNAI QPNLNQNINF VNDPNQDYYN AMGFLDEKPP TNNFGYMSTF  240
PANGDVALKS STPSDAVPLY FSSDQGSNSF DCSDFGWGEQ GSKTPEISSV LSSVMEESDD  300
SLFLEDASPT KKLKSNPEDL VPVQDNAGKT LTDELSAFEM KYFQTPYLDG SWDASVDVFL  360
SADATQDGGN SVDLWSFDDL VGGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.13e-88ERF family protein