PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000848.1_g470.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 391aa MW: 43199 Da PI: 6.5998

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000848.1_g470.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.9	8.8e-08	20	64	2	40
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r C+ +++ + l+C+ ++ lC +C e H+ Ht++ Pav_sc0000848.1_g470.1.mk 20 QKRLCDYCGSSMALLYCRADSAKLCFSCDREVHSAnqlfskHTRS 64 7899****99*******************667888888875 PP
2	zf-B_box	29.3	1.8e-09	65	107	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++ ++++fC++ ++ lC++C e+H + H+++p Pav_sc0000848.1_g470.1.mk 65 LLCDACDGSPASIFCTTESSVLCQNCDWESH-NlssssvHDRRP 107 57*****************************.558888898877 PP
3	CCT	60.3	6.3e-21	347	389	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Re al+RYk K+ktR++eK+irYesRK++AesR R+KGrF+k Pav_sc0000848.1_g470.1.mk 347 RETALSRYKAKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 389 99***************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MNGSSRNKQA EAPQPEQEHQ KRLCDYCGSS MALLYCRADS AKLCFSCDRE VHSANQLFSK 60 HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL 120 LTVVGFENMD KKALLLSDES GGGGGGGDGF LGSGVDGSFD LDDGFSDFLV WDTPSVVSLD 180 DLIVSNPAYK FQAMGVPPLP KNRNAACGRH KEEIFRQLRV LVKSEPNLFS ENVDVKPLES 240 LASEQNMQRG SLFTGFEHDA EPTVFPAYEA HDFQCNDCGT AEKRESSPKT FIRSYLHECC 300 VVPDKHSYND GSASHANDGH GHGGQTNSEA SSAFPKVAAH ELSSQNRETA LSRYKAKKKT 360 RRYEKHIRYE SRKVRAESRT RIKGRFAKMD H

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MNGSSRNKQA EAPQPEQEHQ KRLCDYCGSS MALLYCRADS AKLCFSCDRE VHSANQLFSK  60
HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL  120
LTVVGFENMD KKALLLSDES GGGGGGGDGF LGSGVDGSFD LDDGFSDFLV WDTPSVVSLD  180
DLIVSNPAYK FQAMGVPPLP KNRNAACGRH KEEIFRQLRV LVKSEPNLFS ENVDVKPLES  240
LASEQNMQRG SLFTGFEHDA EPTVFPAYEA HDFQCNDCGT AEKRESSPKT FIRSYLHECC  300
VVPDKHSYND GSASHANDGH GHGGQTNSEA SSAFPKVAAH ELSSQNRETA LSRYKAKKKT  360
RRYEKHIRYE SRKVRAESRT RIKGRFAKMD H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-91	CO-like family protein