PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000848.1_g550.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 471aa MW: 50445.8 Da PI: 8.9187

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000848.1_g550.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.1	4.5e-11	45	71	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ Pav_sc0000848.1_g550.1.mk 45 PGVPNCVYYMRTGFCGYGIRCRYNHPR 71 5789*********************96 PP
2	zf-CCCH	40.9	3.3e-13	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Pav_sc0000848.1_g550.1.mk 92 EPICQYYLKTGTCKFGASCKFHHPK 116 799********************96 PP
3	zf-CCCH	36.9	5.9e-12	137	162	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ Pav_sc0000848.1_g550.1.mk 137 GENECSYYLKTGQCKFGITCKFNHPQ 162 6789********************97 PP
4	zf-CCCH	36.9	6.1e-12	292	318	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H++ Pav_sc0000848.1_g550.1.mk 292 PGEPECQYYLKTGDCKYGPSCRYHHPR 318 5799*********************96 PP
5	zf-CCCH	35.5	1.7e-11	339	363	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ Pav_sc0000848.1_g550.1.mk 339 GVQPCTFYLQNGHCKFGSTCKFDHP 363 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MELYGRSPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG 60 YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG 120 SLSRAPLNIY GLPLRPGENE CSYYLKTGQC KFGITCKFNH PQPAGTTIPA SAPQFYPSVQ 180 SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGYGPVLIPP GVVPIQGWSP YSAPLSPVLS 240 PGAQPTVGAT SLYGVTQLSS PTHGLARPYT SVPSAVGPSS SSPSEQVFPE RPGEPECQYY 300 LKTGDCKYGP SCRYHHPRDR VVPRTNCLLS PIGLPLRPGV QPCTFYLQNG HCKFGSTCKF 360 DHPIGTMRYN PSASSLVDMP VTPYPVGSLL ATLAPSSSST DLRPELISTS KKDSYSTRVP 420 SSGNTSSSSV GLIFTQSGSV SISDVQHSSQ TSVPLSSSRS TRQGGEVRRS S

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MELYGRSPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG  120
SLSRAPLNIY GLPLRPGENE CSYYLKTGQC KFGITCKFNH PQPAGTTIPA SAPQFYPSVQ  180
SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGYGPVLIPP GVVPIQGWSP YSAPLSPVLS  240
PGAQPTVGAT SLYGVTQLSS PTHGLARPYT SVPSAVGPSS SSPSEQVFPE RPGEPECQYY  300
LKTGDCKYGP SCRYHHPRDR VVPRTNCLLS PIGLPLRPGV QPCTFYLQNG HCKFGSTCKF  360
DHPIGTMRYN PSASSLVDMP VTPYPVGSLL ATLAPSSSST DLRPELISTS KKDSYSTRVP  420
SSGNTSSSSV GLIFTQSGSV SISDVQHSSQ TSVPLSSSRS TRQGGEVRRS S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein