PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000848.1_g640.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 579aa MW: 63081.8 Da PI: 7.9091

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000848.1_g640.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pav_sc0000848.1_g640.1.mk 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	15.4	5.4e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Pav_sc0000848.1_g640.1.mk 146 WKCDKCSKKYAVQSDWKAHQKTC 168 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MSNITGDVEE GSFSSGNNTG ELEVHQENQQ QNHLQASGSG GASGAQSNSN DPSAEVIALS 60 PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTTTEVRKRV YICPEPTCVH 120 HNPARALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHQKTCGT REYKCDCGTI 180 FSRRDSFITH RAFCDALAEE NNKVNHGLMS SQTQMPLPHD QLISSMAMNT NSSMGGGSDV 240 LNYDISNKNS LNKSFPDDLV PMPFKSMNMN IMAGGGGGGP GMFSSTSGSL FGGPRSVSSA 300 SASSLQLSSN NNNNNSSSGF NYLHHQETKN GGSTQSNITG AAQMSATALL QKAAQMGATA 360 SNSTINSPMM QKSFVSSMAG PDQLSVNPIS INNNNNNNNN NIRPPSSYDD HHHQFQQQQP 420 PDHHQPHNSH NMVVGGFANQ LMQKGGPQEM SQLFDHHTNS AASSTMTDMG LFSQVFMGIG 480 GDPHHHHEIS AANNSSSPNS IHGIRINAME RGAMGPSTTL DLLGIGGSRP PNLHEHHHQQ 540 QRLDLEAMSQ HRLPAAIMNP FQQQRSHGDS AMEKQIWDV

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MSNITGDVEE GSFSSGNNTG ELEVHQENQQ QNHLQASGSG GASGAQSNSN DPSAEVIALS  60
PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTTTEVRKRV YICPEPTCVH  120
HNPARALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHQKTCGT REYKCDCGTI  180
FSRRDSFITH RAFCDALAEE NNKVNHGLMS SQTQMPLPHD QLISSMAMNT NSSMGGGSDV  240
LNYDISNKNS LNKSFPDDLV PMPFKSMNMN IMAGGGGGGP GMFSSTSGSL FGGPRSVSSA  300
SASSLQLSSN NNNNNSSSGF NYLHHQETKN GGSTQSNITG AAQMSATALL QKAAQMGATA  360
SNSTINSPMM QKSFVSSMAG PDQLSVNPIS INNNNNNNNN NIRPPSSYDD HHHQFQQQQP  420
PDHHQPHNSH NMVVGGFANQ LMQKGGPQEM SQLFDHHTNS AASSTMTDMG LFSQVFMGIG  480
GDPHHHHEIS AANNSSSPNS IHGIRINAME RGAMGPSTTL DLLGIGGSRP PNLHEHHHQQ  540
QRLDLEAMSQ HRLPAAIMNP FQQQRSHGDS AMEKQIWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	2e-91	C2H2 family protein