PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000848.1_g660.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 176aa    MW: 19907.1 Da    PI: 7.2542
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000848.1_g660.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.61.1e-5538133297
                      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                                +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy+eplk 
  Pav_sc0000848.1_g660.1.mk  38 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKR 121
                                89********************************************************************************** PP

                      NF-YB  86 ylkkyrelegek 97 
                                yl++yrelegek
  Pav_sc0000848.1_g660.1.mk 122 YLHRYRELEGEK 133
                                **********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MDNNIGNNSS DREGFKYNFT GTSISSDHHH HHEDGVIKEQ DRLLPIANVG RIMKQILPPN  60
AKISKEAKET MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDICWALATL GFDDYAEPLK  120
RYLHRYRELE GEKAAHQGKA NSSEEKNEVS PPRTSTSSPL KFNVLERGNS SLSRRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-68NF-YB family protein