PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000852.1_g530.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 418aa MW: 47922.9 Da PI: 6.9166

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000852.1_g530.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	156	179	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H Pav_sc0000852.1_g530.1.mk 156 YICGVCGRKCKSNLDLKKHFKQlH 179 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MNLLCNPIHT FPYKYKPFPL ISLHSSRSPF FNSKRSFQPQ PITTSSTRTR SYVAIKAAAN 60 SEIDMVQNKQ GIYTPKQKKV VILWDLDNKP PRGPPYQAAM ALKQVAQRFG EVVESSAYAN 120 RHAFDHLPQW VIEQRRERKQ LDILERKGLV VPSEPYICGV CGRKCKSNLD LKKHFKQLHE 180 RERQKKLNRM RSLKGKKRQR FKERFVSGNH KYNEAARSLI KPKVGYGLAS ELRRAGVFVK 240 TVEDKPQAAD WALKRQMHHS MSRGIDWLFL VSDDSDFSEM LRKAREANLG TVVVGDFDRA 300 LGRHADVWVP WIGVENGEVS EKDLVPKRRR SEFFDEDDDD KGDGLFSHSG FDGGSELDNV 360 VDELVVTRSL SSGMRISAFS EGELEEGDWV EDDGDSEDSE DYLLDSEDEE TDEEDGFF

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MNLLCNPIHT FPYKYKPFPL ISLHSSRSPF FNSKRSFQPQ PITTSSTRTR SYVAIKAAAN  60
SEIDMVQNKQ GIYTPKQKKV VILWDLDNKP PRGPPYQAAM ALKQVAQRFG EVVESSAYAN  120
RHAFDHLPQW VIEQRRERKQ LDILERKGLV VPSEPYICGV CGRKCKSNLD LKKHFKQLHE  180
RERQKKLNRM RSLKGKKRQR FKERFVSGNH KYNEAARSLI KPKVGYGLAS ELRRAGVFVK  240
TVEDKPQAAD WALKRQMHHS MSRGIDWLFL VSDDSDFSEM LRKAREANLG TVVVGDFDRA  300
LGRHADVWVP WIGVENGEVS EKDLVPKRRR SEFFDEDDDD KGDGLFSHSG FDGGSELDNV  360
VDELVVTRSL SSGMRISAFS EGELEEGDWV EDDGDSEDSE DYLLDSEDEE TDEEDGFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	176	RRERKQLDILERKGLVVPSEPYICGVCGRKCKSNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-173	C2H2 family protein