PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000852.1_g620.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 362aa MW: 39783.4 Da PI: 6.0938

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000852.1_g620.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.3	2.1e-16	169	215	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Pav_sc0000852.1_g620.1.mk 169 VHNMSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 215 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MADLYGTAPD SEEISNILSQ LLHGHGSSAS PSSSCMPFKP TYTHLLHSSV APHLTTTSTE 60 VLISETRHED YHRFARSEDR RVVDGNSAAA VVESSSGFDF TDSGGYFQAE VKEGMESDAN 120 TSLKGRRISS ENDLGDFSYD SEKGHDRSEV PLNPAPPRSL SKRSRAAEVH NMSEKRRRSR 180 INEKMKALQN LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LTMKNGLSLH PMCLPGVMQP 240 MQLPHMGLGL EEGSNKFPKS SRGISPFYEG EENPMQSAFN ISPGCTISNQ PMVLPSVANV 300 PTSEATYGFE PSIQALYRPF SVPTSSKELF RDGEPQAKLD ISETGKNSSS HVDILSTKRP 360 DV

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MADLYGTAPD SEEISNILSQ LLHGHGSSAS PSSSCMPFKP TYTHLLHSSV APHLTTTSTE  60
VLISETRHED YHRFARSEDR RVVDGNSAAA VVESSSGFDF TDSGGYFQAE VKEGMESDAN  120
TSLKGRRISS ENDLGDFSYD SEKGHDRSEV PLNPAPPRSL SKRSRAAEVH NMSEKRRRSR  180
INEKMKALQN LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LTMKNGLSLH PMCLPGVMQP  240
MQLPHMGLGL EEGSNKFPKS SRGISPFYEG EENPMQSAFN ISPGCTISNQ PMVLPSVANV  300
PTSEATYGFE PSIQALYRPF SVPTSSKELF RDGEPQAKLD ISETGKNSSS HVDILSTKRP  360
DV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	7e-46	bHLH family protein