PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000852.1_g630.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 273aa    MW: 29840.2 Da    PI: 6.8379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000852.1_g630.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35e-1270117455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h   Er RR+++++ f+ L  llP++      K  K++i+ +Av YIksL+
  Pav_sc0000852.1_g630.1.mk  70 MHTWTERERRKKMRDMFSSLHALLPQL----PAKAYKSTIVDEAVTYIKSLE 117
                                57788*********************6....399****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MSCLQQNSVL GSPNSNLGTC GGGELLKLEM MGVNVNSYLN SGSALMEKGV IKESSGKAAS  60
GGGNESEHGM HTWTERERRK KMRDMFSSLH ALLPQLPAKA YKSTIVDEAV TYIKSLEKIL  120
QTKQKQKLDK LQSTSALIAS NTELAGETRE AFLADHLHPS KNLMVTNAFP ASLFPACFET  180
WFSPTVVLNI CGPDAQFSVC SPRKPGLLTT ILYILEKHEL DVVSAHISSD QYRCMYMIHA  240
HAGGACDHFP ETLSVEDTFK LAAGEINLWL LSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-40bHLH family protein