PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000862.1_g200.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 178aa MW: 19667.5 Da PI: 9.8731

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000862.1_g200.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00037	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H Pav_sc0000862.1_g200.1.mk 95 HECHICGLEFAVGQALGGHMRRH 117 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MKRGREDQDD QTLDLVNCLM LLSKIDQPDS SPTKAEDLKR GRVFICKTCN REFPSFQALG 60 GHRASHKKPK LTPGGAVDLL QLAQSPESAA KPKTHECHIC GLEFAVGQAL GGHMRRHREE 120 IQANAVRARS SPATPVLKKS NSSKRVSSFN LDLNLDLRLG LPAYHSQYDL ATKLQLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	3e-34	C2H2 family protein