PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000877.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 90aa    MW: 10333.7 Da    PI: 7.5228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000877.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.1e-0616561454
                               HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                               d+i++   +L+ llP+ + + ++  +s + iLe+++ YI+ L
  Pav_sc0000877.1_g040.1.mk 16 DEIKELVLKLKPLLPQlD-HRRNASVSASGILEETCSYIRRL 56
                               578888899*******55.889999***************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    
MSSRRSSSRA SKLADDEIKE LVLKLKPLLP QLDHRRNASV SASGILEETC SYIRRLNKEV  60
DDLSQRLSQL LDSADITEVD EQLIRRLFQH