PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000877.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 255aa    MW: 28218.8 Da    PI: 6.518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000877.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-053584154
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               +r  + erE++ R++ N+ f eL + l  +    ++ + Ka+iL +A++ +k+L
  Pav_sc0000877.1_g080.1.mk 35 KRIHKAEREKQKREHFNELFLELADALELN----QQNNGKASILCEATRLLKDL 84
                               688899*********************998....68899999******999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGSQNPVPAA DKTNVTEASV RGAFSRKKIP GKIPKRIHKA EREKQKREHF NELFLELADA  60
LELNQQNNGK ASILCEATRL LKDLIGQIEY LQKENASLLS ESNYMTIEKN ELREDNSALE  120
TQIEKLHSEI EDKVVQSKPD LNAAPPCAEL RPKVASHFPG TSVSLPTQDP SLQQAPAVFV  180
MPLCPDLQSY PLPDAAQLTS NTTSHVSKPH ARYPTSVDSW PSQLLGEKPT AGKESRQLGN  240
SSNICRSRET DPDNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.29e-50bHLH family protein