PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000877.1_g1000.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 242aa    MW: 26893.9 Da    PI: 4.5408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000877.1_g1000.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.79.2e-101740124
                         NAM  1 lppGfrFhPtdeelvveyLkkkve 24
                                lppGfrFhPtdeel+++yL+kk e
  Pav_sc0000877.1_g1000.1.mk 17 LPPGFRFHPTDEELISHYLHKKNE 40
                                79******************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MENVPAGMVE QDEKIDLPPG FRFHPTDEEL ISHYLHKKNE WVICRVFEKN SGGKKTHISG  60
FVRYGALGNE MGPSGLPLLM DSSPYSSKTK LASESSYVPC FSNPDPTDVQ RDQGIVDYMN  120
NPLFGVSSNT SNFFPRAPFS NSFYSDQSAP ISANFQFPSS VLMQDQSILR ALLENNGSNM  180
RQSFKTEREM VSVSQETGLT SEMNNEISSV MSNLEMGRRP FGDQEAPAAA AGAVDLDNFW  240
NY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-46NAC family protein