PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000877.1_g1530.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 653aa MW: 72527.5 Da PI: 10.4485

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000877.1_g1530.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.5	6.6e-15	431	477	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ L++l+P+a K +Ka++L ++++Y+ +Lq Pav_sc0000877.1_g1530.1.mk 431 VHNQSERKRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVIKYLEQLQ 477 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
ITRGNTGSQG SVGKMSHYSD AQDIEFSTAV AAAAFAIHSN EEARLQTKTL RDAMAGRPSS 60 GEVNRRLSNK EAKNAGEASM RKPMGQDQRT LESAFTSRYP NRASSTRPST PADGYQNRRE 120 SSTRHNTLET EADAWEKAQI KKIQRRYEKV KSAILAWENE KKMQAKIKME KRKSELEQRR 180 ASNMQHYQIK QTRIDQIAGG ARAQMEEKRR NEESKVREKV KRIRAKGKVP YRSNYDVTEL 240 KLENGQLAMH GLGGLLPTSQ AKHTWGRAFD TLESVVHQAT HHRREPNLIH NGQTPANISS 300 MVASSGRTWT DNGGQVPLAE GWMRKRTRSD SDYHGNNFSG STTSIHEEHA DPSTCASPSP 360 SASAKLCRDN EKTMTTWASF ESLPSLKSTK SPDEDSASHG GLENQDDGQE TTKDGESGRS 420 RSTRPKRAAA VHNQSERKRR DRINQKMKAL QRLVPNASKT DKASMLDEVI KYLEQLQAQV 480 QMMSSVRNMP HMNMNMNMMM PLGMQQQQHL HQMSFLAHMG MGGNVGPLGL GMGMGIGIID 540 MSNNMARMAA HAHHQSLRSL IPHPTPVVAA APTFIPPFMV PPLMPRHPPS QAKPDPACTN 600 ASDRLPDPYG ALLAQQSMNM DLFNRMAALY NQQVNHTTAA TSSPSQSNHV QGN

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

ITRGNTGSQG SVGKMSHYSD AQDIEFSTAV AAAAFAIHSN EEARLQTKTL RDAMAGRPSS  60
GEVNRRLSNK EAKNAGEASM RKPMGQDQRT LESAFTSRYP NRASSTRPST PADGYQNRRE  120
SSTRHNTLET EADAWEKAQI KKIQRRYEKV KSAILAWENE KKMQAKIKME KRKSELEQRR  180
ASNMQHYQIK QTRIDQIAGG ARAQMEEKRR NEESKVREKV KRIRAKGKVP YRSNYDVTEL  240
KLENGQLAMH GLGGLLPTSQ AKHTWGRAFD TLESVVHQAT HHRREPNLIH NGQTPANISS  300
MVASSGRTWT DNGGQVPLAE GWMRKRTRSD SDYHGNNFSG STTSIHEEHA DPSTCASPSP  360
SASAKLCRDN EKTMTTWASF ESLPSLKSTK SPDEDSASHG GLENQDDGQE TTKDGESGRS  420
RSTRPKRAAA VHNQSERKRR DRINQKMKAL QRLVPNASKT DKASMLDEVI KYLEQLQAQV  480
QMMSSVRNMP HMNMNMNMMM PLGMQQQQHL HQMSFLAHMG MGGNVGPLGL GMGMGIGIID  540
MSNNMARMAA HAHHQSLRSL IPHPTPVVAA APTFIPPFMV PPLMPRHPPS QAKPDPACTN  600
ASDRLPDPYG ALLAQQSMNM DLFNRMAALY NQQVNHTTAA TSSPSQSNHV QGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	436	441	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-34	bHLH family protein