PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000877.1_g1650.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 442aa    MW: 47325.1 Da    PI: 8.8885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000877.1_g1650.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045155174221
                                 EETTTTEEESSHHHHHHHHH CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                 +C  C+ s+s+k+n++ Hi 
  Pav_sc0000877.1_g1650.1.mk 155 RCDVCNISCSSKENYEAHIL 174
                                 6*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MSANPTPSST NHSTILSYTN PNSNFTINSH FQMFNPSQDS TNFNYHIPYQ SNTINPNNNQ  60
RWLFPPPVVP SALAFDPALR PPGTEPNANS GSYSWTHVVF QAQTPFGEDP NAGSQNGAIQ  120
QAEPIGHEAS IKSLNESLLV PTTSNSLWNS NVTNRCDVCN ISCSSKENYE AHILGKKHQK  180
KIRMQYNPTA AVSNVLNNIS LPSQTSSVGG QVIFGGSGVA AGEELETKRR KVVNGGAAVD  240
SVGVCTICNV VCNSQEVYIK HLAGKRHKAQ ASLVAPNVGP YFAAAQSEVT GIWSKDPNKI  300
KLVQSAWCEV CKVNCNSNDT YIKHLVGKKH QKNLEQLEKL KNDGSASTSN VPSAATNAII  360
GPMEKPGVKG SQPEEDLETK KRKIISGGAA AGAVRMCTVC NVVCNSQTVF SSHLAGQKHA  420
AMVKKQAEVG VAIRASQQIT AS