PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000882.1_g130.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 125aa    MW: 13953.9 Da    PI: 7.7354
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000882.1_g130.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.5e-4061051100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +Ca+Ck+lrr+C++dC+l+pyfp+++p++fa vh+++Gasnv k+l++l ++ r +a+++l yeA++r++dP++G+vgvi++l+
  Pav_sc0000882.1_g130.1.mk   6 RCAGCKYLRRRCPSDCILSPYFPSSDPQRFASVHRIYGASNVAKMLQELMPHLRAQAAETLRYEAQCRIQDPISGCVGVISQLH 89 
                                6*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                qq++ ++ +la++++e
  Pav_sc0000882.1_g130.1.mk  90 QQIQDTECQLAKTRAE 105
                                ***********99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    
MNMSGRCAGC KYLRRRCPSD CILSPYFPSS DPQRFASVHR IYGASNVAKM LQELMPHLRA  60
QAAETLRYEA QCRIQDPISG CVGVISQLHQ QIQDTECQLA KTRAEVALMN SDGQEPPQAQ  120
ADQQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.17e-49LBD family protein