PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000886.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 638aa MW: 71461 Da PI: 6.0913

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000886.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.2e-14	439	485	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f L++++P+ + K +K++iL A+eY+k+L+ Pav_sc0000886.1_g010.1.mk 439 NHALSERRRREKLNERFCVLKSMVPSiS------KDDKVSILDDAIEYLKDLE 485 7999********************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MNMAARLQNQ DRVPENLRKQ LALAVRSIEW SYAIFWSISA RQPGVLEWGD GYYNGDIKTR 60 KTVQAIELNA DQMGLQRSEQ LRELYESLSA GEASPQARRP SASLSPEDLA DTEWYYLVCM 120 SFVFNVGQGL PGRTLANGQP IWLCNAHYAD SKVFTRSLLA KTVVCFPFLG GVIELGVTDL 180 VMEDPDLIQH VKTSFLEVPY PIASKKTNPS AGSTRNDNDL ACTVLDHDVM DTKLIPVVGC 240 EEMNVTSPNN SSNGLGLNQP ADDSFMVEGM NGGASQVQSW QFMDDEFSNF VHHSMDSSDC 300 ISQTLVYPEK VLLGPKAEKA SDHCLHDLKE HNSKKLTSLD PQGNDLQYQS VLSALLKGSR 360 QLILGPNFRN FHQESSFVSW KRGGFVKCRK QRGGSPQKLL KQILFEVPRL HVDCVLESPE 420 DNSNRNGVWR PEADEIGMNH ALSERRRREK LNERFCVLKS MVPSISKDDK VSILDDAIEY 480 LKDLEKRVEE LESCQEPSDL EAKIKRKIQD TIERTSDNCC NTKISNGKKP LVYKRKASDI 540 DETEPEISYV ISKHGSSDNI TVNMNKKDVL IEMKFPWREG VLLEIMDATS RLQLDTHSVQ 600 SSTADGILCV TIKSRFKGST VASAGTIQQA LQRIARSC

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MNMAARLQNQ DRVPENLRKQ LALAVRSIEW SYAIFWSISA RQPGVLEWGD GYYNGDIKTR  60
KTVQAIELNA DQMGLQRSEQ LRELYESLSA GEASPQARRP SASLSPEDLA DTEWYYLVCM  120
SFVFNVGQGL PGRTLANGQP IWLCNAHYAD SKVFTRSLLA KTVVCFPFLG GVIELGVTDL  180
VMEDPDLIQH VKTSFLEVPY PIASKKTNPS AGSTRNDNDL ACTVLDHDVM DTKLIPVVGC  240
EEMNVTSPNN SSNGLGLNQP ADDSFMVEGM NGGASQVQSW QFMDDEFSNF VHHSMDSSDC  300
ISQTLVYPEK VLLGPKAEKA SDHCLHDLKE HNSKKLTSLD PQGNDLQYQS VLSALLKGSR  360
QLILGPNFRN FHQESSFVSW KRGGFVKCRK QRGGSPQKLL KQILFEVPRL HVDCVLESPE  420
DNSNRNGVWR PEADEIGMNH ALSERRRREK LNERFCVLKS MVPSISKDDK VSILDDAIEY  480
LKDLEKRVEE LESCQEPSDL EAKIKRKIQD TIERTSDNCC NTKISNGKKP LVYKRKASDI  540
DETEPEISYV ISKHGSSDNI TVNMNKKDVL IEMKFPWREG VLLEIMDATS RLQLDTHSVQ  600
SSTADGILCV TIKSRFKGST VASAGTIQQA LQRIARSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	444	449	ERRRRE
2	445	450	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein