PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000890.1_g990.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 233aa    MW: 25812.7 Da    PI: 10.6375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000890.1_g990.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.61.9e-1215901090
                               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                         B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                                + + rl+lp  f+++ +++k    + ++  +   sW v++   ++ ++   +++GW+eFv+ +gLk g++++Fk++g++ f
  Pav_sc0000890.1_g990.1.mk 15 GF-NTRLSLPVAFCSSLSENKLD--KAVI-KSCLGSWHVRV--GRTVDGvLSFEEGWEEFVNHHGLKLGEILIFKHNGKRVF 90
                               44.457********999766433..3444.556689*****..666666599***********************9886666 PP
2B354.81.7e-17131212885
                                -HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   8 sdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                                s+   + + l++p +fa+++g++ ++   ++l+d+sgrsW + l+     +++s r  + t+GW +F +an+Lk gD+++F+l+
  Pav_sc0000890.1_g990.1.mk 131 SHGDPHkAYLTIPARFARSNGIVATS--RIILKDLSGRSWPLILSRwesiSRGSHRiAIRTNGWYKFYEANKLKNGDVCTFSLK 212
                                4444443789***********99766..6***************66476644444457778********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MAVKCSKFFK FLAPGFNTRL SLPVAFCSSL SENKLDKAVI KSCLGSWHVR VGRTVDGVLS  60
FEEGWEEFVN HHGLKLGEIL IFKHNGKRVF NVVAYEALGS EKGYDSKGKS PSEATASSTS  120
RTSFVCTMKK SHGDPHKAYL TIPARFARSN GIVATSRIIL KDLSGRSWPL ILSRWESISR  180
GSHRIAIRTN GWYKFYEANK LKNGDVCTFS LKPVSSKSGS KSARVMDVQI TRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-18B3 family protein