PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000893.1_g1240.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 620aa MW: 66419.8 Da PI: 8.8399

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000893.1_g1240.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Pav_sc0000893.1_g1240.1.mk 77 FICEVCNKGFQREQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	13	0.0003	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Pav_sc0000893.1_g1240.1.mk 153 WKCEKCSKRYAVQSDWKAHSKTC 175 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPSKTDPE 60 AEVIALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKTT KEPKRKVYLC 120 PEPTCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY 180 RCDCGTLFSR RDSFITHRAF CDALAQESAR HPPSLSTIGS SLYGGSLSNT GLGLSHQVVG 240 PPQISSLQQD HSQSSTAADI LRLGGAGGAG AARTGQFDHL LGSSFRPAAQ SSASFFLTAA 300 DQSTQQQYHD HDQDKSFQGL MQFSDHHHHH LHQNNNNSNN PPHHHSAGAN LFSLPFLSNN 360 TTNTTNNNNL LISPDHFNTN ANGTTTAAGG SEGSHNLFSG HIVGGDHISS GIPSLYSTNS 420 NNNNNNNQQQ HASMAHMSAT ALLQKAAQMG STNSSNNTTA SLLRSFGSSS SATAKSDRPG 480 SLVPSSLGGM FGTDQQDQSH LQDLMNSFAN TGGSSIFANA SFGGYDAAAA NRAINMEETK 540 LQQQNSLGVS NIGGADRLTR DFLGVGQVVR SISGGFSHQR LEHHSEQQHG MDMSSLDSES 600 NAAAAAAPSS QSFGGGGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPSKTDPE  60
AEVIALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKTT KEPKRKVYLC  120
PEPTCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR RDSFITHRAF CDALAQESAR HPPSLSTIGS SLYGGSLSNT GLGLSHQVVG  240
PPQISSLQQD HSQSSTAADI LRLGGAGGAG AARTGQFDHL LGSSFRPAAQ SSASFFLTAA  300
DQSTQQQYHD HDQDKSFQGL MQFSDHHHHH LHQNNNNSNN PPHHHSAGAN LFSLPFLSNN  360
TTNTTNNNNL LISPDHFNTN ANGTTTAAGG SEGSHNLFSG HIVGGDHISS GIPSLYSTNS  420
NNNNNNNQQQ HASMAHMSAT ALLQKAAQMG STNSSNNTTA SLLRSFGSSS SATAKSDRPG  480
SLVPSSLGGM FGTDQQDQSH LQDLMNSFAN TGGSSIFANA SFGGYDAAAA NRAINMEETK  540
LQQQNSLGVS NIGGADRLTR DFLGVGQVVR SISGGFSHQR LEHHSEQQHG MDMSSLDSES  600
NAAAAAAPSS QSFGGGGNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-112	C2H2 family protein