PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000893.1_g1280.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 542aa MW: 59012.9 Da PI: 6.5515

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000893.1_g1280.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	462	494	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq Pav_sc0000893.1_g1280.1.mk 462 DRITALQQIVSPF-----GKTDTASVLYEAIQYIKFLQ 494 6788888888887.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MAEECRESTS CVAISSSSPQ LAQPNWWDLH AAAAAGAAGS QLSSWSNLGI NPWQPQPPQQ 60 QPNQKYSNSS NNCDDVDQDV SISSTSFTNA SNHSSLSVDS SRRLQVADQR SASPNNDMIN 120 GEQVSDNHIW NHVLLSVNGN NDLHHNDHDV GENFLDALSS KSLSTDHVMY EPACDYLKKL 180 DNSTWEFTKY VSAASNNFNS FEKQLNGGFM ENNNMNNNVN IENERLTKLS NMVNTWSIAP 240 PEPQLVMDHD HHHYLKPQAF INNDSTSCDA QMGNNNITNR NSGSSLFPSY GSKVEAACVA 300 GGGGAIHGIT PSFGNNTNGI EYQIGLNNVN AMVADHHNGK YLYGNGSILP DSYSSCGATS 360 AGARNFADVI SFSSRLGNKS ALVDIHAPKP CFKSSNLSDQ YSKKQASSTR VSGGRGQGIA 420 NEGKKKRTDD TSSETVLKKP KQETSTVSSS VKMQAPKVKL GDRITALQQI VSPFGKTDTA 480 SVLYEAIQYI KFLQDQVHVG DAKVDLKNKG LCLVPISCTP QVYRENTGSD YWTPTYRGCL 540 YR

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MAEECRESTS CVAISSSSPQ LAQPNWWDLH AAAAAGAAGS QLSSWSNLGI NPWQPQPPQQ  60
QPNQKYSNSS NNCDDVDQDV SISSTSFTNA SNHSSLSVDS SRRLQVADQR SASPNNDMIN  120
GEQVSDNHIW NHVLLSVNGN NDLHHNDHDV GENFLDALSS KSLSTDHVMY EPACDYLKKL  180
DNSTWEFTKY VSAASNNFNS FEKQLNGGFM ENNNMNNNVN IENERLTKLS NMVNTWSIAP  240
PEPQLVMDHD HHHYLKPQAF INNDSTSCDA QMGNNNITNR NSGSSLFPSY GSKVEAACVA  300
GGGGAIHGIT PSFGNNTNGI EYQIGLNNVN AMVADHHNGK YLYGNGSILP DSYSSCGATS  360
AGARNFADVI SFSSRLGNKS ALVDIHAPKP CFKSSNLSDQ YSKKQASSTR VSGGRGQGIA  420
NEGKKKRTDD TSSETVLKKP KQETSTVSSS VKMQAPKVKL GDRITALQQI VSPFGKTDTA  480
SVLYEAIQYI KFLQDQVHVG DAKVDLKNKG LCLVPISCTP QVYRENTGSD YWTPTYRGCL  540
YR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	5e-43	bHLH family protein