PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000893.1_g140.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 487aa MW: 53518.5 Da PI: 6.6041

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000893.1_g140.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cg+sF++ ++ +H ++ Pav_sc0000893.1_g140.1.mk 127 YECPICGQSFRSEDEVSVHVDSC 149 99*****************8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MGDKFKEFIK NPFSSSSSGK FKGQGRVLGS SSSGPANSAL LRQSQAPQSK PKPNPVSNSN 60 SNSNSSSSAA SPNPKPSPQK TQILDQNKPE FSNNSKPNRK PENGFDPFDS LITPGKRSQN 120 GYTLNVYECP ICGQSFRSED EVSVHVDSCV NTSVDNKSAE GLGVSGSEDI RVGSSRSELE 180 ARIGTFASGN PATGSVEVVL RLLRNIVKEP ENVKFRKIRM SNLKIREAIG EVVGGIELLE 240 FVGFELKEEE GEMWAMMEVP SEEQISLMKN GIALLEPPKV QELQKIENSP SIDTPKVDEQ 300 IEPKKVDRQT KVFFSVSESV AARIELPESF YNLSAMELKR EAETRKKKIE DSQMLIPRSY 360 KEKQAKAAKN RYRKTVVRIQ FPDGVVLQGV FSPWDSTSSL YEYVSSALKE PSLEFELLNP 420 VAIKRRVIPH FPRAGEKAAT LADEDLVPSA LVKFKPIETD SVVFTGLCNE LLEISEPLTS 480 GSAVAPV

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MGDKFKEFIK NPFSSSSSGK FKGQGRVLGS SSSGPANSAL LRQSQAPQSK PKPNPVSNSN  60
SNSNSSSSAA SPNPKPSPQK TQILDQNKPE FSNNSKPNRK PENGFDPFDS LITPGKRSQN  120
GYTLNVYECP ICGQSFRSED EVSVHVDSCV NTSVDNKSAE GLGVSGSEDI RVGSSRSELE  180
ARIGTFASGN PATGSVEVVL RLLRNIVKEP ENVKFRKIRM SNLKIREAIG EVVGGIELLE  240
FVGFELKEEE GEMWAMMEVP SEEQISLMKN GIALLEPPKV QELQKIENSP SIDTPKVDEQ  300
IEPKKVDRQT KVFFSVSESV AARIELPESF YNLSAMELKR EAETRKKKIE DSQMLIPRSY  360
KEKQAKAAKN RYRKTVVRIQ FPDGVVLQGV FSPWDSTSSL YEYVSSALKE PSLEFELLNP  420
VAIKRRVIPH FPRAGEKAAT LADEDLVPSA LVKFKPIETD SVVFTGLCNE LLEISEPLTS  480
GSAVAPV