PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000893.1_g920.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family BBR-BPC
Protein Properties Length: 278aa    MW: 30595.1 Da    PI: 10.2745
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000893.1_g920.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind340.73.7e-10412781301
                  GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaern 71 
                                mddd+ + rn+gyyep+  +k +lglqlmss+aerd+k     r+  + + ++++a+++rd          ++ +rd+++++  
  Pav_sc0000893.1_g920.1.mk   1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAERDTKAfvpgRDPAV-MVSSNGAFHPRDcvvsdapvpLNY-MRDSWVNQ-- 78 
                                9***9999*******99..*******************9999999998.99**********999999999999.99999999.. PP

                  GAGA_bind  72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqr 155
                                      ++k+l++++++ +        + vl++t+ ++slq      l+++     e     +  iee +  +ke   +kkr  
  Pav_sc0000893.1_g920.1.mk  79 ------RDKFLNMMPANPN--------YAVLPETSGAHSLQI-----LQPPDSSRDE----RVARIEE-PVANKEGGPSKKRGG 138
                                ......789*****96654........899********9999.....4444444222....2344444.333344455555666 PP

                  GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
                                +  pk++k kk++k    +k++++ +s+ +r+k  kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++
  Pav_sc0000893.1_g920.1.mk 139 GGAPKTPKVKKPRK----PKDNNN-PSV-PRVKPAKKSLDVVINGINMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNV 216
                                67777777777776....222334.443.689**************************************************** PP

                  GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL+ hWA+HGtnkfvtir
  Pav_sc0000893.1_g920.1.mk 217 SMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRGHWARHGTNKFVTIR 278
                                *************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM AERDTKAFVP GRDPAVMVSS NGAFHPRDCV  60
VSDAPVPLNY MRDSWVNQRD KFLNMMPANP NYAVLPETSG AHSLQILQPP DSSRDERVAR  120
IEEPVANKEG GPSKKRGGGG APKTPKVKKP RKPKDNNNPS VPRVKPAKKS LDVVINGINM  180
DISGIPIPVC SCTGAPQQCY RWGCGGWQSA CCTTNVSMYP LPMSTKRRGA RIAGRKMSQG  240
AFKKVLEKLA AEGYNFANPI DLRGHWARHG TNKFVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-110BBR-BPC family protein