PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000907.1_g180.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 172aa    MW: 19712.1 Da    PI: 4.6961
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000907.1_g180.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.11.4e-0871111142
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 
                                ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++ + +
  Pav_sc0000907.1_g180.1.br  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYQSMELK 111
                                69********************8888.********9876555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MAMKQSNNIW IRRQQCPCGD WKCYIQYEGD DLGSVSSQHV KSETTPSSPS SEVVFTPYVG  60
QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYQSMEL KECEMLCMKN  120
CPCTAFATLD TRDGGSGCLL WFSELIDVRN FTENGQDIYF RMAASELGIE SF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-44FAR1 family protein