PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000907.1_g680.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 172aa    MW: 18677.2 Da    PI: 10.2583
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000907.1_g680.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-183265134
                       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                               Cs C tt+TplWR gp g+k+LCnaCG+++rk+g
  Pav_sc0000907.1_g680.1.mk 32 CSDCMTTETPLWRGGPAGPKSLCNACGIRHRKRG 65
                               ********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MMNWGRRFVA LDSVLGRKEP FTQAMNGNKK RCSDCMTTET PLWRGGPAGP KSLCNACGIR  60
HRKRGIPTVS LMSKGPKRRR EKIRGSSSSS ITTTYNTAAS ATTAKSTFGS SGGGINLNEP  120
PKVRFVGFGE DVFFQGSQAE GEGEKQSQWR EWGEVEQAAV CLLAMSCDSV FA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16280RKRGIPTVSLMSKGPKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-21GATA family protein