PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000909.1_g120.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 541aa MW: 59620.4 Da PI: 9.5468

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000909.1_g120.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	348	371	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++C ++F ++ + +H r+ H Pav_sc0000909.1_g120.1.mk 348 YTCSKCRRVFETSQFFASHSRSvH 371 9*******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MASSLFRFGL HDETIEATRL RLRSHPNYSA LNNCLSESCG LMRSFCPHSH PSHPHPHRQP 60 QPQLLGNNIV NPNMRLISYQ NQQPLISHNM PRSRVHIHTF IDINEPAAAQ GLGGSPHFLL 120 AQLSSSSPLR AHEEVLRSQL LSATSNAERF LGQSIFPNPT SSSSSVLLNT NPVNRHHPIH 180 FGTNNTAGST SRVNKRAEAS SSHAPFNFQR PKYFNNYGHI FPYRSQNSQP PTVISIESDD 240 DVSSSDDEPI VAEPISVYIP TPQPKPSEYQ SKEPTPEVPT NFQNLNSPNY DDAHRDQSNG 300 ERELPPSGGD GDVGDLLAVP DEHVDQVAVC DLGDGKTRSL KHDKNGPYTC SKCRRVFETS 360 QFFASHSRSV HPRSPEEIAR GEALKADRKS KKRVPRKEKK QEPKRKKVNK KSASMKEKDP 420 EPKQKRSRVS KKSVTMKEKD QEEVVAASGF AGYGSGGADS TVTIVLPHGE SYSHETIRAK 480 KRKARSMNVP TAVAPDSGGA GDGQVGVKIG KKKDSEKAGP SGYGGMNFEG LFEVEVQMEQ 540 K

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MASSLFRFGL HDETIEATRL RLRSHPNYSA LNNCLSESCG LMRSFCPHSH PSHPHPHRQP  60
QPQLLGNNIV NPNMRLISYQ NQQPLISHNM PRSRVHIHTF IDINEPAAAQ GLGGSPHFLL  120
AQLSSSSPLR AHEEVLRSQL LSATSNAERF LGQSIFPNPT SSSSSVLLNT NPVNRHHPIH  180
FGTNNTAGST SRVNKRAEAS SSHAPFNFQR PKYFNNYGHI FPYRSQNSQP PTVISIESDD  240
DVSSSDDEPI VAEPISVYIP TPQPKPSEYQ SKEPTPEVPT NFQNLNSPNY DDAHRDQSNG  300
ERELPPSGGD GDVGDLLAVP DEHVDQVAVC DLGDGKTRSL KHDKNGPYTC SKCRRVFETS  360
QFFASHSRSV HPRSPEEIAR GEALKADRKS KKRVPRKEKK QEPKRKKVNK KSASMKEKDP  420
EPKQKRSRVS KKSVTMKEKD QEEVVAASGF AGYGSGGADS TVTIVLPHGE SYSHETIRAK  480
KRKARSMNVP TAVAPDSGGA GDGQVGVKIG KKKDSEKAGP SGYGGMNFEG LFEVEVQMEQ  540
K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	407	KKRVPRKEKKQEPKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22990.1	1e-08	C2H2 family protein