PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000978.1_g030.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 203aa    MW: 23073.3 Da    PI: 5.8745
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000978.1_g030.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18151203254
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                rk+ +++keq  +Le+ F+++ +++ +++++LA+kl+L  rqV vWFqNrRa+
  Pav_sc0000978.1_g030.1.mk 151 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRAR 203
                                788899*********************************************98 PP
2HD-ZIP_I/II79.84.3e-26151203153
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 
                                +kk+rlskeq+++LE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRAR
  Pav_sc0000978.1_g030.1.mk 151 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRAR 203
                                69**************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MSFDEACNTG LGLSLGCSDS PDHDHTNLQA PPDHHHHHHH QNMYKNKQIQ LKYDHLLPSL  60
TLGPSDASKI EEAESTDLHQ VVTVQEQASS PCSGAVSSFS NSSSFKRDRD LGGEEIEVEV  120
EVEVEEERVV NITSSRASED LYEQDHEGSP RKKLRLSKEQ SATLEDSFRE HTTLNPKQKQ  180
DLARKLNLRP RQVEVWFQNR RAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.14e-31HD-ZIP family protein