PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000988.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 239aa    MW: 27320.9 Da    PI: 9.2327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000988.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-1290141155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++ +hn+ Er RR++iNs ++  r+llP +   ++k ls   +  ++ +YI +Lq
  Pav_sc0000988.1_g020.1.mk  90 KKINHNASERERRKKINSLYSSMRSLLPAD---QAKTLSIPNTISRVLKYIPELQ 141
                                6789**************************...9999***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MVTSLSNQIK PKPAPYLPSH HASFISSFVF NRWMAFRGSH YDQKYFYRDS STDQIAESFL  60
HILPSQLPQF ELDLSTTMSG DNSRGSTVAK KINHNASERE RRKKINSLYS SMRSLLPADQ  120
AKTLSIPNTI SRVLKYIPEL QKQVEGLIRK RDECLSRASK QEDVMQEDIK SFSSKSAVST  180
YRLSDREVAI QISTLKTHNN LLSEIFLNLE EEEGLHVLNA SSLESSGERV FYNLHLQMT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-45bHLH family protein