PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000988.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 246aa MW: 28350.2 Da PI: 8.8611

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000988.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	74	125	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ hn+ Er RR++iNs ++ Lr+llP + + kKls + ++v+YI +Lq Pav_sc0000988.1_g060.1.mk 74 KKLHHNASERDRRKKINSLYSSLRSLLPAD---QMKKLSIPNTISRVVKYIPELQ 125 5778************************...9****************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MLALSPPTFS TVGWPLEDPK SHDQNYFYRD RFTDQIAESF LHILPSQLPQ VELARSTPST 60 TVSREYSGGS TMVKKLHHNA SERDRRKKIN SLYSSLRSLL PADQMKKLSI PNTISRVVKY 120 IPELQKQVEG LIRKREELLL RISKQEDQEL HEEKKMKSTA GSSLSAVSTY RLNDREVAIQ 180 ISTSKTHKNL LSEILLNLEE EGLQMLNASS FESSGERVFY NLHLQVERSY RLECENLNEK 240 LMSFYA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	157	RKREELLLRISKQEDQELHEEKKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-52	bHLH family protein