PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000998.1_g640.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 235aa    MW: 27541.7 Da    PI: 9.2361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000998.1_g640.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.6e-0783128555
                                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                h  +Er RR++ ++++  L ++lP+ a      K +K  i++++   I++Lq
  Pav_sc0000998.1_g640.1.mk  83 HMLNERMRREKQKQSYMALHSMLPNgA------KSDKNWIVQMTAMNIQQLQ 128
                                6789*********************66......899999*****99999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MNMDQYILEA LEGEFLLYES LPVLNQRAFV PYASRPITEE GLDKPPNYMN MNKRMVQFLR  60
KSWAPATARI ETGEDVRERG FRHMLNERMR REKQKQSYMA LHSMLPNGAK SDKNWIVQMT  120
AMNIQQLQRY KEELRKRNME FEAILAANEK ERVNWSKIRL RVANPTSGVD SMLEVLRCLQ  180
YLGLKARNVQ SNFSAQEFSA ELEIETKIGA AEIEEALQET LYEAERKLRF SLPGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.14e-45bHLH family protein