PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001009.1_g350.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 218aa    MW: 24547.3 Da    PI: 10.0379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001009.1_g350.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.27e-122171146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                               +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  Pav_sc0001009.1_g350.1.mk 21 KQKWTAEEEAALKAGVVKHGAGKWRTILKDPEysgvlYSRSNVDLKDKWRN 71
                               79****************************99999***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MEFQIDSLVE FFVLLFMGAP KQKWTAEEEA ALKAGVVKHG AGKWRTILKD PEYSGVLYSR  60
SNVDLKDKWR NMSVMANGWG SREKAKTAVR RMHPVPKQEE NSMALSTVVQ SDEDVMDAKP  120
IAFSSDTQQT SGPKRSIVRL DNLITEAITS LKEPGGSNKT TIAAYIEVAF YVQQTKSVEQ  180
YWAPPDFKRL LSAKLKYLTS SRKLIKVNIL CNLIISKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.11e-87MYB_related family protein