PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001025.1_g130.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 633aa    MW: 70473.8 Da    PI: 6.2213
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001025.1_g130.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.34.8e-2967151187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++  t+++fdq
  Pav_sc0001025.1_g130.1.mk  67 RWPRQETLALLQIRSDMDVAFRDASVKGPLWDEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQ 148
                                8********************************************************************975544..6****** PP

                   trihelix  85 lea 87 
                                lea
  Pav_sc0001025.1_g130.1.mk 149 LEA 151
                                *85 PP
2trihelix104.76.6e-33439523186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k ev+aLi++r++++++++++  k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+q
  Pav_sc0001025.1_g130.1.mk 439 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQ 521
                                8********************************************************************97.99********** PP

                   trihelix  85 le 86 
                                l+
  Pav_sc0001025.1_g130.1.mk 522 LD 523
                                98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    
MLGDSSVLGS AISRDAATTA AVAVPEGGGG DGGGGGGGSN SGEDTFRGGG GGDDLLGSGE  60
RSFGGNRWPR QETLALLQIR SDMDVAFRDA SVKGPLWDEV SRKLAALGYH RSAKKCKEKF  120
ENVYKYHRRT KEGRTGKSEG KTYRFFDQLE ALENQPSTPG TTHHHQAKPH HQSTMAAAAA  180
TMATMASTIP SSAAPHPIIS NVSSQAIAAP ALNLAAPNSF PPTNPIVLPP PPQPPPPTMT  240
NPTNNPHHHH HNTFSSSFPN ISADLSTSSS TSSDEDLEGR AKRKRKWKDF FQRLMKEVIQ  300
KQEDLQMRFL EAIEKREQEK MVREEAWRMQ EMARVNRERE ILAQERSMAA AKDAAVMSFL  360
QKISEQQQNP NQSQNQTPPP GQSQINNNLL QLQPPPLVPP PPRQPAPPPQ QPATNFDLVP  420
KPNNNGENNN LSSPASSSRW PKVEVQALIK LRTSLDSKYQ ENGPKGPLWE EISGAMRKLG  480
YNRSSKRCKE KWENINKYFK KVKESNKRRP EDSKTCPYFH QLDSLYRERN KFDHNNVNPK  540
PENSVPLMVR PEQQWPPPTP QQQQQQDHQN MDIDHQNQED DRHDHQDKEN IIGGDEDEEE  600
EDDDEEDEEE DEGDGNYEIV ANKPAPVGAA AAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-59Trihelix family protein