PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001051.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 450aa MW: 49926.3 Da PI: 4.9327

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001051.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.9	2.4e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H+++ Pav_sc0001051.1_g030.1.mk 16 ARACDSCIRKRARWYCAADDAFLCQACDSSVHSAnqlarrHERI 59 578*****************************657777788766 PP
2	CCT	67.9	2.6e-23	395	438	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Pav_sc0001051.1_g030.1.mk 395 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 438 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MSSNKKVANA VGAKTARACD SCIRKRARWY CAADDAFLCQ ACDSSVHSAN QLARRHERIL 60 LKTASSLKPT DKDDQVSVSD NPAAPSWHGG FTRKARTPRQ GKHKSQEGAR NRFPQVPEIG 120 ADDSNSYDEE NEEDQQQLLY RVPVFDPFVA EMCTATTSAN SNEEAVANYE LANTGDVSKV 180 SSSSPNYNHN GHDGFLLPSD MDLADFAADV DSLLGRGLED DECFGMEGLG LMDSKENESN 240 CRVKLEDEEE EEEGGTGGVN FMGCELGETP EIDMMREPFV LNFEDYDDSP QSCGEQDDKL 300 GVGMMDTTYS GDHQRHEEVH AGASKSRKKK EIFLRLDYEA VITAWDGSPW TSGGRPDLNS 360 ECLPDCMGVC ATELHYPYGD LNGLGVQPAM ADGGREARVS RYREKRRTRL FSKKIRYEVR 420 KLNAEKRPRM KGRFVKRASF AGSAFPVLTK

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MSSNKKVANA VGAKTARACD SCIRKRARWY CAADDAFLCQ ACDSSVHSAN QLARRHERIL  60
LKTASSLKPT DKDDQVSVSD NPAAPSWHGG FTRKARTPRQ GKHKSQEGAR NRFPQVPEIG  120
ADDSNSYDEE NEEDQQQLLY RVPVFDPFVA EMCTATTSAN SNEEAVANYE LANTGDVSKV  180
SSSSPNYNHN GHDGFLLPSD MDLADFAADV DSLLGRGLED DECFGMEGLG LMDSKENESN  240
CRVKLEDEEE EEEGGTGGVN FMGCELGETP EIDMMREPFV LNFEDYDDSP QSCGEQDDKL  300
GVGMMDTTYS GDHQRHEEVH AGASKSRKKK EIFLRLDYEA VITAWDGSPW TSGGRPDLNS  360
ECLPDCMGVC ATELHYPYGD LNGLGVQPAM ADGGREARVS RYREKRRTRL FSKKIRYEVR  420
KLNAEKRPRM KGRFVKRASF AGSAFPVLTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	406	422	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	7e-87	CO-like family protein