PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001051.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 170aa    MW: 18298.7 Da    PI: 8.8593
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001051.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26040.86.5e-13463155
                     DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55
                               +C++C+vlr++C+++C ++p +     p++q++++ +++k++G++ +l+l++a +++ r+
  Pav_sc0001051.1_g040.1.mk  4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGSQHLRP 63
                               6****************************************************9999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGSQH  60
LRPGLPIAGV DADALHLIPS PPNKSGDIRH VFRDSNSGGS RNKVATRNRF KRSMNRTKTH  120
PGSVTEFATG SHMAQFCNFP DPDDLCPSPE GNGAGGDYDG EVGLELTLGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-39LBD family protein