PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001051.1_g240.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 115aa    MW: 13343.5 Da    PI: 10.1847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001051.1_g240.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-192067148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  Pav_sc0001051.1_g240.1.mk 20 RGPWTLEEDTLLIHYIASHGEGHWNSLAKCAGLKRTGKSCRLRWLNYL 67
                               89*********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    
MAAVTKRACN PNEEEIELRR GPWTLEEDTL LIHYIASHGE GHWNSLAKCA GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLMILELHSK WGNRSLTIFK LNHSVKFITI KLNHN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.16e-51MYB family protein