PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001060.1_g140.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 217aa    MW: 25387.8 Da    PI: 7.4972
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001060.1_g140.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.9e-161253344
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                               i n+  r+ tf kR++ i KKA ELS LCd++v++i++  ++
  Pav_sc0001060.1_g140.1.mk 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCDIDVCLIVYEADQ 53
                               779999*******************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MVAPRRRSLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC DIDVCLIVYE ADQKKGRAVQ  60
PETWPRDPTQ FKRILNKYKD SKDTSAPGLK RTFNMSDFYE DKKDHVDDED EKFQNLGKKI  120
SEDEYPTWDD RIDDFSQDEL TKLIASLESK IQVATKKIDS MERYMGFAKK QNQSLVREET  180
NHDEQPYQVP VLMSPPPLVH YPMLPSAWVS SSESEKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527RRRSLELIPNEGTRKMTFRKRKK
22327RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-23M-type_MADS family protein