PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001080.1_g1040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 373aa    MW: 42778.2 Da    PI: 5.1499
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001080.1_g1040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.7e-181353343
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                i ++  r+vtf kR+ng++KKA+EL +LCd++v+ i++ ++
  Pav_sc0001080.1_g1040.1.mk 13 IRDDKARKVTFRKRKNGLFKKAFELTTLCDVKVCTIVYEKK 53
                                889999*******************************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MGRRKTKLAL ELIRDDKARK VTFRKRKNGL FKKAFELTTL CDVKVCTIVY EKKSEGKLAP  60
PQTFPEKFEE VKEIIDKYKS NSSKIKKVQN LADFYATQTM QVKKEIVKLR NKSYEEKYPT  120
WDDRLNEYSL DQMHELLNNL EAKIQAANKI HDMMIIDSKK PEIQDYIPQM ALVQSNLDPP  180
FLSMVDDQNP TNYGSMGMSE SGWDQSATAS TSWANNNIQY APSNVSDYKG TTSIWDYDLF  240
GIDAVPLQYG NMEEKPTFYN NPMQPPYMYD PILSSAATAA TTSQVQQQQQ SFEHPLDVPP  300
INVAYDEPLS LSLQPSYTDC PVSVSAASFS FEYQQFATQS QSQSQSQSYV DDQVRMLYDS  360
MFQLKQNNVS TYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-20M-type_MADS family protein