PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001080.1_g870.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 223aa    MW: 25562.4 Da    PI: 9.1541
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001080.1_g870.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.1e-33144202159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H+h+
  Pav_sc0001080.1_g870.1.mk 144 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTKDEGIVVTTYEGMHTHP 202
                                59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEKYQMFFPC SSSTSSANYD PMIPISATNN ITTDDHHMGM GSSQVYNYFD GRDRSSNGLL  60
GLRSSAENHV GREVLINKDH HQYLQQQYSD LTTTASANIN INNVVVGADQ NPHEATNSGN  120
KNKGEKKTRK PKYAFQTRSQ VDILDDGYRW RKYGQKAVKN NKFPRSYYRC TYQGCNVKKQ  180
VQRLTKDEGI VVTTYEGMHT HPIEKPSDNF EHILNQMQIY TPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.12e-57WRKY family protein